Microarrays--new possibilities for detecting biological factors hazardous for humans and animals, and for use in environmental protection.
Identifieur interne : 000F93 ( Main/Exploration ); précédent : 000F92; suivant : 000F94Microarrays--new possibilities for detecting biological factors hazardous for humans and animals, and for use in environmental protection.
Auteurs : Tomasz Mirski [Pologne] ; Michał Bartoszcze [Pologne] ; Agata Bielawska-Dr Zd [Pologne] ; Romuald Gryko [Pologne] ; Janusz Kocik ; Marcin Niemcewicz [Pologne] ; Krzysztof Chomiczewski [Pologne]Source :
- Annals of agricultural and environmental medicine : AAEM [ 1898-2263 ] ; 2016.
Descripteurs français
- KwdFr :
- MESH :
- analyse : Facteurs biologiques.
- isolement et purification : Bactéries, Virus.
- Analyse sur microréseau, Animaux, Bactéries, Humains, Surveillance de l'environnement, Virus.
English descriptors
- KwdEn :
- MESH :
- chemical , analysis : Biological Factors.
- classification : Bacteria, Viruses.
- isolation & purification : Bacteria, Viruses.
- methods : Environmental Monitoring.
- Animals, Humans, Microarray Analysis.
Abstract
Both the known biological agents that cause infectious diseases, as well as modified (ABF-Advanced Biological Factors) or new, emerging agents pose a significant diagnostic problem using previously applied methods, both classical, as well as based on molecular biology methods. The latter, such as PCR and real-time PCR, have significant limitations, both quantitative (low capacity), and qualitative (limited number of targets). The article discusses the results of studies on using the microarray method for the identification of viruses (e.g. Orthopoxvirus group, noroviruses, influenza A and B viruses, rhino- and enteroviruses responsible for the FRI (Febrile Respiratory Illness), European bunyaviruses, and SARS-causing viruses), and bacteria (Mycobacterium spp., Yersinia spp., Campylobacter spp., Streptococcus pneumoniae, Salmonella typhi, Salmonella enterica, Staphylococcus aureus, Neisseria meningitidis, Clostridium difficile , Helicobacter pylori), including multiple antibiotic-resistant strains. The method allows for the serotyping and genotyping of bacteria, and is useful in the diagnosis of genetically modified agents. It allows the testing of thousands of genes in one experiment. In addition to diagnosis, it is applicable for gene expression studies, analysis of the function of genes, microorganisms virulence, and allows the detection of even single mutations. The possibility of its operational application in epidemiological surveillance, and in the detection of disease outbreak agents is demonstrated.
DOI: 10.5604/12321966.1196849
PubMed: 27007515
Affiliations:
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Puławy</wicri:regionArea><wicri:noRegion>Puławy</wicri:noRegion></affiliation></author><author><name sortKey="Bartoszcze, Michal" sort="Bartoszcze, Michal" uniqKey="Bartoszcze M" first="Michał" last="Bartoszcze">Michał Bartoszcze</name><affiliation wicri:level="1"><nlm:affiliation>Biological Threat Identification and Countermeasure Centre of the Military Institute of Hygiene and Epidemiology, Puławy, Poland.</nlm:affiliation><country xml:lang="fr">Pologne</country><wicri:regionArea>Biological Threat Identification and Countermeasure Centre of the Military Institute of Hygiene and Epidemiology, Puławy</wicri:regionArea><wicri:noRegion>Puławy</wicri:noRegion></affiliation></author><author><name sortKey="Bielawska Dr Zd, Agata" sort="Bielawska Dr Zd, Agata" uniqKey="Bielawska Dr Zd A" first="Agata" last="Bielawska-Dr Zd">Agata Bielawska-Dr Zd</name><affiliation wicri:level="1"><nlm:affiliation>Biological Threat Identification and Countermeasure Centre of the Military Institute of Hygiene and Epidemiology, Puławy, Poland.</nlm:affiliation><country xml:lang="fr">Pologne</country><wicri:regionArea>Biological Threat Identification and Countermeasure Centre of the Military Institute of Hygiene and Epidemiology, Puławy</wicri:regionArea><wicri:noRegion>Puławy</wicri:noRegion></affiliation></author><author><name sortKey="Gryko, Romuald" sort="Gryko, Romuald" uniqKey="Gryko R" first="Romuald" last="Gryko">Romuald Gryko</name><affiliation wicri:level="1"><nlm:affiliation>Biological Threat Identification and Countermeasure Centre of the Military Institute of Hygiene and Epidemiology, Puławy, Poland.</nlm:affiliation><country xml:lang="fr">Pologne</country><wicri:regionArea>Biological Threat Identification and Countermeasure Centre of the Military Institute of Hygiene and Epidemiology, Puławy</wicri:regionArea><wicri:noRegion>Puławy</wicri:noRegion></affiliation></author><author><name sortKey="Kocik, Janusz" sort="Kocik, Janusz" uniqKey="Kocik J" first="Janusz" last="Kocik">Janusz Kocik</name><affiliation><nlm:affiliation>Military Institute of Hygiene and Epidemiology, Department of Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">Department of Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Niemcewicz, Marcin" sort="Niemcewicz, Marcin" uniqKey="Niemcewicz M" first="Marcin" last="Niemcewicz">Marcin Niemcewicz</name><affiliation wicri:level="1"><nlm:affiliation>Biological Threat Identification and Countermeasure Centre of the Military Institute of Hygiene and Epidemiology, Puławy, Poland.</nlm:affiliation><country xml:lang="fr">Pologne</country><wicri:regionArea>Biological Threat Identification and Countermeasure Centre of the Military Institute of Hygiene and Epidemiology, Puławy</wicri:regionArea><wicri:noRegion>Puławy</wicri:noRegion></affiliation></author><author><name sortKey="Chomiczewski, Krzysztof" sort="Chomiczewski, Krzysztof" uniqKey="Chomiczewski K" first="Krzysztof" last="Chomiczewski">Krzysztof Chomiczewski</name><affiliation wicri:level="1"><nlm:affiliation>Faculty of Chemistry and New Technologies, Military Uniwersity of Technology, Warsaw, Poland.</nlm:affiliation><country xml:lang="fr">Pologne</country><wicri:regionArea>Faculty of Chemistry and New Technologies, Military Uniwersity of Technology, Warsaw</wicri:regionArea><wicri:noRegion>Warsaw</wicri:noRegion></affiliation></author></analytic><series><title level="j">Annals of agricultural and environmental medicine : AAEM</title><idno type="eISSN">1898-2263</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Bacteria (classification)</term><term>Bacteria (isolation & purification)</term><term>Biological Factors (analysis)</term><term>Environmental Monitoring (methods)</term><term>Humans</term><term>Microarray Analysis</term><term>Viruses (classification)</term><term>Viruses (isolation & purification)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse sur microréseau</term><term>Animaux</term><term>Bactéries ()</term><term>Bactéries (isolement et purification)</term><term>Facteurs biologiques (analyse)</term><term>Humains</term><term>Surveillance de l'environnement ()</term><term>Virus ()</term><term>Virus (isolement et purification)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>Biological Factors</term></keywords><keywords scheme="MESH" qualifier="analyse" xml:lang="fr"><term>Facteurs biologiques</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Bacteria</term><term>Viruses</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Bacteria</term><term>Viruses</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Bactéries</term><term>Virus</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Environmental Monitoring</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Humans</term><term>Microarray Analysis</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse sur microréseau</term><term>Animaux</term><term>Bactéries</term><term>Humains</term><term>Surveillance de l'environnement</term><term>Virus</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Both the known biological agents that cause infectious diseases, as well as modified (ABF-Advanced Biological Factors) or new, emerging agents pose a significant diagnostic problem using previously applied methods, both classical, as well as based on molecular biology methods. The latter, such as PCR and real-time PCR, have significant limitations, both quantitative (low capacity), and qualitative (limited number of targets). The article discusses the results of studies on using the microarray method for the identification of viruses (e.g. Orthopoxvirus group, noroviruses, influenza A and B viruses, rhino- and enteroviruses responsible for the FRI (Febrile Respiratory Illness), European bunyaviruses, and SARS-causing viruses), and bacteria (Mycobacterium spp., Yersinia spp., Campylobacter spp., Streptococcus pneumoniae, Salmonella typhi, Salmonella enterica, Staphylococcus aureus, Neisseria meningitidis, Clostridium difficile , Helicobacter pylori), including multiple antibiotic-resistant strains. The method allows for the serotyping and genotyping of bacteria, and is useful in the diagnosis of genetically modified agents. It allows the testing of thousands of genes in one experiment. In addition to diagnosis, it is applicable for gene expression studies, analysis of the function of genes, microorganisms virulence, and allows the detection of even single mutations. The possibility of its operational application in epidemiological surveillance, and in the detection of disease outbreak agents is demonstrated. </div></front></TEI><affiliations><list><country><li>Pologne</li></country></list><tree><noCountry><name sortKey="Kocik, Janusz" sort="Kocik, Janusz" uniqKey="Kocik J" first="Janusz" last="Kocik">Janusz Kocik</name></noCountry><country name="Pologne"><noRegion><name sortKey="Mirski, Tomasz" sort="Mirski, Tomasz" uniqKey="Mirski T" first="Tomasz" last="Mirski">Tomasz Mirski</name></noRegion><name sortKey="Bartoszcze, Michal" sort="Bartoszcze, Michal" uniqKey="Bartoszcze M" first="Michał" last="Bartoszcze">Michał Bartoszcze</name><name sortKey="Bielawska Dr Zd, Agata" sort="Bielawska Dr Zd, Agata" uniqKey="Bielawska Dr Zd A" first="Agata" last="Bielawska-Dr Zd">Agata Bielawska-Dr Zd</name><name sortKey="Chomiczewski, Krzysztof" sort="Chomiczewski, Krzysztof" uniqKey="Chomiczewski K" first="Krzysztof" last="Chomiczewski">Krzysztof Chomiczewski</name><name sortKey="Gryko, Romuald" sort="Gryko, Romuald" uniqKey="Gryko R" first="Romuald" last="Gryko">Romuald Gryko</name><name sortKey="Niemcewicz, Marcin" sort="Niemcewicz, Marcin" uniqKey="Niemcewicz M" first="Marcin" last="Niemcewicz">Marcin Niemcewicz</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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